Features

GUI

  • Reads / writes SBML
  • Creation and edition of models
  • Does not assume that every cell behaves the same (stochastic)
  • Samples the distribution of cell phenotypes
  • State-of-the-art stochastic simulation algorithms
  • Moving histogram visualizations of the system distributions
  • 3D histograms of the population distributions
  • Export of the simulation results in ASCII or NetCDF formats

Simulation Algorithms

  • Multi-scale partitioning to speed simulation
  • Two fixed-step integrators
  • Adaptive time step integration for stiff systems
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